Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RaraP11416 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
RaraP11416 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Gm8344-201ENSMUST00000119813 856 ntBASIC16.57■□□□□ 0.24
RaraP11416 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
RaraP11416 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
RaraP11416 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.57■□□□□ 0.24
RaraP11416 Gm27357-201ENSMUST00000183754 135 ntBASIC16.57■□□□□ 0.24
RaraP11416 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.57■□□□□ 0.24
RaraP11416 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
RaraP11416 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.57■□□□□ 0.24
RaraP11416 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC16.56■□□□□ 0.24
RaraP11416 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC16.56■□□□□ 0.24
RaraP11416 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
RaraP11416 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RaraP11416 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RaraP11416 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
RaraP11416 Gm33142-201ENSMUST00000193913 867 ntBASIC16.56■□□□□ 0.24
RaraP11416 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RaraP11416 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.56■□□□□ 0.24
RaraP11416 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
RaraP11416 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.55■□□□□ 0.24
RaraP11416 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Camk2g-217ENSMUST00000226630 1937 ntBASIC16.55■□□□□ 0.24
RaraP11416 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
RaraP11416 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Gm8655-201ENSMUST00000221159 852 ntBASIC16.55■□□□□ 0.24
RaraP11416 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.55■□□□□ 0.24
RaraP11416 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC16.55■□□□□ 0.24
RaraP11416 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RaraP11416 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.54■□□□□ 0.24
RaraP11416 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RaraP11416 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RaraP11416 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
RaraP11416 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Gm12895-201ENSMUST00000122214 226 ntBASIC16.54■□□□□ 0.24
RaraP11416 Gm44487-201ENSMUST00000205145 325 ntBASIC16.54■□□□□ 0.24
RaraP11416 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RaraP11416 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC16.54■□□□□ 0.24
RaraP11416 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RaraP11416 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 65.8 ms