Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44357-201ENSMUST00000195897 142 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm19658-201ENSMUST00000196231 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44367-201ENSMUST00000196836 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44350-201ENSMUST00000197197 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44390-201ENSMUST00000197533 144 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44313-201ENSMUST00000198018 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44486-201ENSMUST00000198508 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44314-201ENSMUST00000199263 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44394-201ENSMUST00000199558 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44484-201ENSMUST00000199873 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44466-201ENSMUST00000200264 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm44359-201ENSMUST00000200671 138 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gm6296-201ENSMUST00000222599 943 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim3Q9R1R2 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Gm11452-201ENSMUST00000122376 690 ntBASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Gm12497-201ENSMUST00000138778 237 ntBASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 AC133598.3-202ENSMUST00000224219 531 ntBASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Trim3Q9R1R2 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Mzt1-203ENSMUST00000227948 952 ntBASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Trim3Q9R1R2 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms