Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Gm5279-201ENSMUST00000199575 745 ntBASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn4aQ9ER60 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Gm18753-201ENSMUST00000201000 566 ntBASIC20.68■□□□□ 0.9
Scn4aQ9ER60 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn4aQ9ER60 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm8652-201ENSMUST00000181363 964 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm5370-201ENSMUST00000187187 574 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm29127-201ENSMUST00000188304 517 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm8775-201ENSMUST00000170943 1327 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm27486-201ENSMUST00000184923 80 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 AC126253.1-201ENSMUST00000227974 824 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Gm6091-201ENSMUST00000098307 165 ntBASIC20.67■□□□□ 0.9
Scn4aQ9ER60 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm43118-201ENSMUST00000199149 775 ntBASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm9299-201ENSMUST00000206392 1140 ntBASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn4aQ9ER60 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gm18307-201ENSMUST00000206864 949 ntBASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn4aQ9ER60 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Gm15808-201ENSMUST00000119046 604 ntBASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Gm8801-201ENSMUST00000173255 1064 ntBASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 AC154276.1-201ENSMUST00000228874 1299 ntBASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn4aQ9ER60 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm4691-201ENSMUST00000182339 1000 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm2451-201ENSMUST00000199447 999 ntBASIC20.64■□□□□ 0.89
Scn4aQ9ER60 Gm43822-201ENSMUST00000200285 476 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms