Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Gm7446-201ENSMUST00000221035 1240 ntBASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf1Q9EPU0 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Gm27631-201ENSMUST00000184163 466 ntBASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Gm3961-201ENSMUST00000204425 994 ntBASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 CU024892.2-201ENSMUST00000224608 832 ntBASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf1Q9EPU0 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Gm10327-201ENSMUST00000105222 1002 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Gm13350-201ENSMUST00000120519 479 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Gm7584-201ENSMUST00000175829 940 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Mir7070-201ENSMUST00000183657 86 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Gm7561-201ENSMUST00000211203 886 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 AC093022.1-201ENSMUST00000226949 1072 ntBASIC17.23■□□□□ 0.35
Upf1Q9EPU0 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf1Q9EPU0 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Gm43822-201ENSMUST00000200285 476 ntBASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 AC132317.1-201ENSMUST00000227227 962 ntBASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf1Q9EPU0 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Gm23931-201ENSMUST00000103842 109 ntBASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
Upf1Q9EPU0 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms