Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp40Q8BWR4 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 CT010506.4-201ENSMUST00000225457 351 ntBASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Usp40Q8BWR4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 AC164567.1-201ENSMUST00000219185 960 ntBASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp40Q8BWR4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Usp40Q8BWR4 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Usp40Q8BWR4 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Usp40Q8BWR4 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Dancr-204ENSMUST00000132389 2347 ntBASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 AC131710.1-201ENSMUST00000228336 990 ntBASIC20.94■□□□□ 0.94
Usp40Q8BWR4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp40Q8BWR4 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 AC069562.2-201ENSMUST00000224644 2146 ntBASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC20.93■□□□□ 0.94
Usp40Q8BWR4 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms