Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Ccdc166-201ENSMUST00000182172 2584 ntBASIC14.55□□□□□ -0.08
Msx1P13297 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 App-207ENSMUST00000227737 2827 ntBASIC14.55□□□□□ -0.08
Msx1P13297 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC14.55□□□□□ -0.08
Msx1P13297 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.55□□□□□ -0.08
Msx1P13297 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC14.55□□□□□ -0.08
Msx1P13297 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.55□□□□□ -0.08
Msx1P13297 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.55□□□□□ -0.08
Msx1P13297 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.55□□□□□ -0.08
Msx1P13297 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Msx1P13297 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Msx1P13297 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Msx1P13297 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Msx1P13297 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC14.54□□□□□ -0.08
Msx1P13297 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.54□□□□□ -0.08
Msx1P13297 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.54□□□□□ -0.08
Msx1P13297 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC14.54□□□□□ -0.08
Msx1P13297 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC14.54□□□□□ -0.08
Msx1P13297 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Msx1P13297 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.54□□□□□ -0.08
Msx1P13297 Gm44616-201ENSMUST00000206417 1732 ntBASIC14.54□□□□□ -0.08
Msx1P13297 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Msx1P13297 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Msx1P13297 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Msx1P13297 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Msx1P13297 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Msx1P13297 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.53□□□□□ -0.08
Msx1P13297 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Msx1P13297 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 Gm44872-201ENSMUST00000207864 420 ntBASIC14.53□□□□□ -0.08
Msx1P13297 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC14.53□□□□□ -0.08
Msx1P13297 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Msx1P13297 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Msx1P13297 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Msx1P13297 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Msx1P13297 AC163637.1-201ENSMUST00000215491 1894 ntBASIC14.52□□□□□ -0.08
Msx1P13297 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msx1P13297 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Msx1P13297 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Msx1P13297 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Msx1P13297 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms