Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim3Q9R1R2 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim3Q9R1R2 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Trim3Q9R1R2 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trim3Q9R1R2 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gm13884-201ENSMUST00000118103 829 ntBASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim3Q9R1R2 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Gm7506-201ENSMUST00000207758 815 ntBASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Gm9172-201ENSMUST00000212092 954 ntBASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Rps4l-201ENSMUST00000071745 943 ntBASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim3Q9R1R2 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim3Q9R1R2 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
Trim3Q9R1R2 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim3Q9R1R2 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.45□□□□□ -0.1
Trim3Q9R1R2 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim3Q9R1R2 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms