Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Mir3113-201ENSMUST00000175478 76 ntBASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Hmgb4Q6P8W9 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm8344-201ENSMUST00000119813 856 ntBASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm11764-201ENSMUST00000120221 623 ntBASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 App-207ENSMUST00000227737 2827 ntBASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Hmgb4Q6P8W9 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm5648-201ENSMUST00000122244 1587 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm25911-201ENSMUST00000157621 56 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm2308-201ENSMUST00000166539 1004 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm37153-201ENSMUST00000193637 231 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 AC093926.2-201ENSMUST00000214468 1228 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm11873-201ENSMUST00000117877 1304 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Hmgb4Q6P8W9 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Gm11185-201ENSMUST00000117732 1007 ntBASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Hmgb4Q6P8W9 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms