Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Gm5264-201ENSMUST00000190584 848 ntBASIC18.09■□□□□ 0.49
Limch1Q3UH68 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Psmb5-202ENSMUST00000227257 622 ntBASIC18.09■□□□□ 0.49
Limch1Q3UH68 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Tfap2a-203ENSMUST00000223869 2037 ntBASIC18.09■□□□□ 0.49
Limch1Q3UH68 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Limch1Q3UH68 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Limch1Q3UH68 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Gm2213-201ENSMUST00000197485 688 ntBASIC18.08■□□□□ 0.48
Limch1Q3UH68 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.08■□□□□ 0.48
Limch1Q3UH68 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Limch1Q3UH68 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Gm4459-201ENSMUST00000118750 468 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 Gm15173-201ENSMUST00000122049 433 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 Gm12497-201ENSMUST00000138778 237 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Gm18622-201ENSMUST00000219361 595 ntBASIC18.07■□□□□ 0.48
Limch1Q3UH68 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Limch1Q3UH68 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.06■□□□□ 0.48
Limch1Q3UH68 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Gm19164-201ENSMUST00000210667 640 ntBASIC18.06■□□□□ 0.48
Limch1Q3UH68 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Limch1Q3UH68 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms