Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm14494-201ENSMUST00000118786 435 ntBASIC16.25■□□□□ 0.19
Shmt1P50431 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.25■□□□□ 0.19
Shmt1P50431 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.25■□□□□ 0.19
Shmt1P50431 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.25■□□□□ 0.19
Shmt1P50431 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.25■□□□□ 0.19
Shmt1P50431 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Shmt1P50431 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.24■□□□□ 0.19
Shmt1P50431 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Shmt1P50431 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC16.24■□□□□ 0.19
Shmt1P50431 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Shmt1P50431 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.24■□□□□ 0.19
Shmt1P50431 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Shmt1P50431 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Gm13294-201ENSMUST00000121757 1330 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Shmt1P50431 Gm4995-201ENSMUST00000117247 432 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.23■□□□□ 0.19
Shmt1P50431 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.23■□□□□ 0.19
Shmt1P50431 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.23■□□□□ 0.19
Shmt1P50431 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.23■□□□□ 0.19
Shmt1P50431 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Shmt1P50431 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Shmt1P50431 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Shmt1P50431 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.22■□□□□ 0.19
Shmt1P50431 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.22■□□□□ 0.19
Shmt1P50431 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.22■□□□□ 0.19
Shmt1P50431 Gm18246-201ENSMUST00000221023 728 ntBASIC16.22■□□□□ 0.19
Shmt1P50431 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Shmt1P50431 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Shmt1P50431 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.21■□□□□ 0.19
Shmt1P50431 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Shmt1P50431 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms