Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm44616-201ENSMUST00000206417 1732 ntBASIC17.78■□□□□ 0.44
Traf1P39428 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Traf1P39428 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Traf1P39428 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Traf1P39428 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Traf1P39428 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 B4galt3-201ENSMUST00000064272 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC17.77■□□□□ 0.44
Traf1P39428 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.77■□□□□ 0.44
Traf1P39428 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.77■□□□□ 0.44
Traf1P39428 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC17.77■□□□□ 0.44
Traf1P39428 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC17.77■□□□□ 0.44
Traf1P39428 Gm43575-201ENSMUST00000196420 516 ntBASIC17.77■□□□□ 0.44
Traf1P39428 AC154572.2-201ENSMUST00000225105 997 ntBASIC17.77■□□□□ 0.44
Traf1P39428 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.77■□□□□ 0.44
Traf1P39428 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.77■□□□□ 0.44
Traf1P39428 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Traf1P39428 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.77■□□□□ 0.44
Traf1P39428 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Traf1P39428 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC17.77■□□□□ 0.43
Traf1P39428 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
Traf1P39428 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC17.77■□□□□ 0.43
Traf1P39428 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Traf1P39428 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Traf1P39428 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.76■□□□□ 0.43
Traf1P39428 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Traf1P39428 Ntrk2-205ENSMUST00000224402 2284 ntBASIC17.76■□□□□ 0.43
Traf1P39428 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC17.76■□□□□ 0.43
Traf1P39428 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.76■□□□□ 0.43
Traf1P39428 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.76■□□□□ 0.43
Traf1P39428 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.76■□□□□ 0.43
Traf1P39428 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Traf1P39428 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.76■□□□□ 0.43
Traf1P39428 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Traf1P39428 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Traf1P39428 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.75■□□□□ 0.43
Traf1P39428 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.75■□□□□ 0.43
Traf1P39428 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Traf1P39428 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Traf1P39428 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC17.75■□□□□ 0.43
Traf1P39428 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.75■□□□□ 0.43
Traf1P39428 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Gm7669-201ENSMUST00000210184 1603 ntBASIC17.75■□□□□ 0.43
Traf1P39428 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Traf1P39428 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Traf1P39428 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Traf1P39428 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Traf1P39428 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Traf1P39428 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Traf1P39428 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.74■□□□□ 0.43
Traf1P39428 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms