Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC13.95□□□□□ -0.18
Lmx1bO88609 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.95□□□□□ -0.18
Lmx1bO88609 Gm15358-201ENSMUST00000119249 520 ntBASIC13.95□□□□□ -0.18
Lmx1bO88609 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Gm37153-201ENSMUST00000193637 231 ntBASIC13.95□□□□□ -0.18
Lmx1bO88609 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.95□□□□□ -0.18
Lmx1bO88609 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Lmx1bO88609 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm4899-201ENSMUST00000178708 719 ntBASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 CT943659.1-201ENSMUST00000215459 326 ntBASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Rbfox2-206ENSMUST00000227314 1810 ntBASIC13.94□□□□□ -0.18
Lmx1bO88609 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC13.94□□□□□ -0.18
Lmx1bO88609 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Lmx1bO88609 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Gm11764-201ENSMUST00000120221 623 ntBASIC13.93□□□□□ -0.18
Lmx1bO88609 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Gm27702-201ENSMUST00000184512 56 ntBASIC13.93□□□□□ -0.18
Lmx1bO88609 Gm19164-201ENSMUST00000210667 640 ntBASIC13.93□□□□□ -0.18
Lmx1bO88609 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 AC122024.2-201ENSMUST00000220086 871 ntBASIC13.93□□□□□ -0.18
Lmx1bO88609 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC13.93□□□□□ -0.18
Lmx1bO88609 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.93□□□□□ -0.18
Lmx1bO88609 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lmx1bO88609 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC13.93□□□□□ -0.18
Lmx1bO88609 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lmx1bO88609 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms