Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Cpsf1Q9EPU4 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Cpsf1Q9EPU4 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Cpsf1Q9EPU4 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm26917-202ENSMUST00000192833 3329 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22065-201ENSMUST00000103753 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22066-201ENSMUST00000103761 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24932-201ENSMUST00000103763 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24115-201ENSMUST00000103799 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22190-201ENSMUST00000103827 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22191-201ENSMUST00000103831 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24721-201ENSMUST00000103849 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm28018-201ENSMUST00000103869 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm26399-201ENSMUST00000103937 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm6973-201ENSMUST00000117080 721 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25349-201ENSMUST00000177728 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm23616-201ENSMUST00000177797 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25871-201ENSMUST00000177816 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24752-201ENSMUST00000178240 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24496-201ENSMUST00000178287 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25649-201ENSMUST00000178476 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25548-201ENSMUST00000178681 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm23147-201ENSMUST00000178841 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm26095-201ENSMUST00000179270 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22171-201ENSMUST00000179283 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm23936-201ENSMUST00000179354 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm22619-201ENSMUST00000179516 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25255-201ENSMUST00000179579 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24755-201ENSMUST00000179691 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm26506-201ENSMUST00000179692 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm25086-201ENSMUST00000179931 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm23243-201ENSMUST00000180047 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24659-201ENSMUST00000180212 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm24169-201ENSMUST00000180244 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm23689-201ENSMUST00000180354 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm27359-201ENSMUST00000184153 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm27785-201ENSMUST00000184268 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm27466-201ENSMUST00000184396 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm27703-201ENSMUST00000184836 110 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Gm10576-201ENSMUST00000191927 825 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 AC159114.1-201ENSMUST00000220349 266 ntBASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Cpsf1Q9EPU4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Gm43125-201ENSMUST00000201724 730 ntBASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cpsf1Q9EPU4 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Gm14026-201ENSMUST00000120625 1789 ntBASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cpsf1Q9EPU4 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms