Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clrn1Q8K445 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clrn1Q8K445 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clrn1Q8K445 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clrn1Q8K445 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Clrn1Q8K445 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Gm13418-201ENSMUST00000119097 944 ntBASIC14.56□□□□□ -0.08
Clrn1Q8K445 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.56□□□□□ -0.08
Clrn1Q8K445 Gm6376-201ENSMUST00000209407 580 ntBASIC14.56□□□□□ -0.08
Clrn1Q8K445 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Clrn1Q8K445 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Gm27528-202ENSMUST00000222916 2012 ntBASIC14.55□□□□□ -0.08
Clrn1Q8K445 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.55□□□□□ -0.08
Clrn1Q8K445 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.55□□□□□ -0.08
Clrn1Q8K445 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Clrn1Q8K445 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Gm11452-201ENSMUST00000122376 690 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Gm11780-201ENSMUST00000136880 516 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Gm6296-201ENSMUST00000222599 943 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Rps4l-201ENSMUST00000071745 943 ntBASIC14.54□□□□□ -0.08
Clrn1Q8K445 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Clrn1Q8K445 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms