Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Otud4-203ENSMUST00000173286 7213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Gm9013-201ENSMUST00000132939 882 ntBASIC14.69□□□□□ -0.06
Nr1h4Q60641 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Nr1h4Q60641 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.69□□□□□ -0.06
Nr1h4Q60641 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Nr1h4Q60641 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm6433-201ENSMUST00000118634 875 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm7507-201ENSMUST00000183053 1008 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm18032-201ENSMUST00000222541 538 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 Spcs1-207ENSMUST00000228767 1008 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm7367-201ENSMUST00000057611 492 ntBASIC14.68□□□□□ -0.06
Nr1h4Q60641 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.68□□□□□ -0.06
Nr1h4Q60641 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.67□□□□□ -0.06
Nr1h4Q60641 AC130713.1-201ENSMUST00000228853 1096 ntBASIC14.67□□□□□ -0.06
Nr1h4Q60641 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.67□□□□□ -0.06
Nr1h4Q60641 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Nr1h4Q60641 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.66□□□□□ -0.06
Nr1h4Q60641 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 11.6 ms