Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC18.49■□□□□ 0.55
Vps54Q5SPW0 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Vps54Q5SPW0 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 AC119177.1-201ENSMUST00000227647 1332 ntBASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Vps54Q5SPW0 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Gm15467-201ENSMUST00000120582 445 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Gm5264-201ENSMUST00000190584 848 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 AC090659.1-201ENSMUST00000224334 768 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Gm7901-201ENSMUST00000120430 1597 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Gm13294-201ENSMUST00000121757 1330 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.46■□□□□ 0.55
Vps54Q5SPW0 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
Vps54Q5SPW0 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Gm8000-201ENSMUST00000188378 592 ntBASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Gm7229-201ENSMUST00000214719 1007 ntBASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Gm18246-201ENSMUST00000221023 728 ntBASIC18.45■□□□□ 0.54
Vps54Q5SPW0 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Vps54Q5SPW0 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Vps54Q5SPW0 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms