Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Gm7774-201ENSMUST00000200064 533 ntBASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Upf3aQ3ULJ3 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Gm25287-201ENSMUST00000103846 110 ntBASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Gm22918-201ENSMUST00000103855 110 ntBASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Gm10253-201ENSMUST00000194270 940 ntBASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Upf3aQ3ULJ3 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Upf3aQ3ULJ3 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Gm13127-201ENSMUST00000118978 1389 ntBASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Gm27430-201ENSMUST00000184585 107 ntBASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Gm44333-201ENSMUST00000197168 107 ntBASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Upf3aQ3ULJ3 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Upf3aQ3ULJ3 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Upf3aQ3ULJ3 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms