Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.26■□□□□ 0.51
Col3a1P08121 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Gm13233-201ENSMUST00000118760 1443 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 Gm13244-201ENSMUST00000118855 1446 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Prob1-201ENSMUST00000097619 3021 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Fgf17-202ENSMUST00000227123 1336 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC18.25■□□□□ 0.51
Col3a1P08121 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
Col3a1P08121 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC18.25■□□□□ 0.51
Col3a1P08121 Gm7774-201ENSMUST00000200064 533 ntBASIC18.25■□□□□ 0.51
Col3a1P08121 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC18.25■□□□□ 0.51
Col3a1P08121 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Col3a1P08121 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Col3a1P08121 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Gm14026-201ENSMUST00000120625 1789 ntBASIC18.24■□□□□ 0.51
Col3a1P08121 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC18.24■□□□□ 0.51
Col3a1P08121 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC18.24■□□□□ 0.51
Col3a1P08121 Celf4-206ENSMUST00000224553 1729 ntBASIC18.24■□□□□ 0.51
Col3a1P08121 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Col3a1P08121 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Col3a1P08121 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Col3a1P08121 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Col3a1P08121 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Col3a1P08121 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 P3h1-201ENSMUST00000030393 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Col3a1P08121 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Col3a1P08121 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC18.23■□□□□ 0.51
Col3a1P08121 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC18.23■□□□□ 0.51
Col3a1P08121 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC18.23■□□□□ 0.51
Col3a1P08121 Gm15483-201ENSMUST00000120338 456 ntBASIC18.23■□□□□ 0.51
Col3a1P08121 Gm15593-201ENSMUST00000122085 1008 ntBASIC18.23■□□□□ 0.51
Col3a1P08121 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.23■□□□□ 0.51
Col3a1P08121 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
Col3a1P08121 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Col3a1P08121 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC18.23■□□□□ 0.51
Col3a1P08121 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC18.23■□□□□ 0.51
Col3a1P08121 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC18.23■□□□□ 0.51
Col3a1P08121 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC18.23■□□□□ 0.51
Col3a1P08121 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Gm8096-201ENSMUST00000209921 1591 ntBASIC18.23■□□□□ 0.51
Col3a1P08121 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Col3a1P08121 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Col3a1P08121 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 AC131743.5-201ENSMUST00000220775 1618 ntBASIC18.22■□□□□ 0.51
Col3a1P08121 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Col3a1P08121 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Col3a1P08121 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Gm22175-201ENSMUST00000175007 78 ntBASIC18.22■□□□□ 0.51
Col3a1P08121 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC18.22■□□□□ 0.51
Col3a1P08121 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC18.22■□□□□ 0.51
Col3a1P08121 AC126408.1-201ENSMUST00000225184 523 ntBASIC18.22■□□□□ 0.51
Col3a1P08121 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC18.22■□□□□ 0.51
Col3a1P08121 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Gm42934-201ENSMUST00000196920 1345 ntBASIC18.22■□□□□ 0.51
Col3a1P08121 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Col3a1P08121 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Col3a1P08121 Gm16011-201ENSMUST00000121567 2662 ntBASIC18.21■□□□□ 0.51
Col3a1P08121 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Col3a1P08121 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms