Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Gm36967-201ENSMUST00000193814 266 ntBASIC12.8□□□□□ -0.36
Hmgb3O54879 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC12.8□□□□□ -0.36
Hmgb3O54879 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Hmgb3O54879 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hmgb3O54879 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
Hmgb3O54879 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hmgb3O54879 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Gm5643-201ENSMUST00000117081 966 ntBASIC12.78□□□□□ -0.36
Hmgb3O54879 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Gm18115-201ENSMUST00000221209 621 ntBASIC12.78□□□□□ -0.36
Hmgb3O54879 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hmgb3O54879 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC12.78□□□□□ -0.36
Hmgb3O54879 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms