Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Gm5354-201ENSMUST00000182417 973 ntBASIC20.88■□□□□ 0.93
Scn4aQ9ER60 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Gm10327-201ENSMUST00000105222 1002 ntBASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Scn4aQ9ER60 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm5940-201ENSMUST00000117582 1068 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm5479-201ENSMUST00000160578 435 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm27731-201ENSMUST00000185192 107 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm18054-201ENSMUST00000207539 555 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 AC139580.1-202ENSMUST00000223574 928 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Gm7399-201ENSMUST00000032395 858 ntBASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.86■□□□□ 0.93
Scn4aQ9ER60 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm2495-201ENSMUST00000191160 466 ntBASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm37466-201ENSMUST00000195692 652 ntBASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm11841-201ENSMUST00000117060 1963 ntBASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Scn4aQ9ER60 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Gm8463-201ENSMUST00000208573 613 ntBASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Scn4aQ9ER60 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 AC154527.2-201ENSMUST00000225256 1466 ntBASIC20.83■□□□□ 0.93
Scn4aQ9ER60 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Gm45453-201ENSMUST00000211758 853 ntBASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Scn4aQ9ER60 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Gm9816-201ENSMUST00000122292 1414 ntBASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Scn4aQ9ER60 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Scn4aQ9ER60 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms