Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 App-207ENSMUST00000227737 2827 ntBASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Smc1aQ9CU62 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.28■□□□□ 0.36
Smc1aQ9CU62 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Smc1aQ9CU62 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Smc1aQ9CU62 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Smc1aQ9CU62 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Smc1aQ9CU62 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 45 ms