Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Mir6404-201ENSMUST00000183699 94 ntBASIC15.07■□□□□ 0
Msh4Q99MT2 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.07■□□□□ 0
Msh4Q99MT2 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC15.07■□□□□ 0
Msh4Q99MT2 Rps4l-201ENSMUST00000071745 943 ntBASIC15.07■□□□□ 0
Msh4Q99MT2 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Msh4Q99MT2 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Msh4Q99MT2 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC15.06■□□□□ 0
Msh4Q99MT2 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm25406-201ENSMUST00000157599 105 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44357-201ENSMUST00000195897 142 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm19658-201ENSMUST00000196231 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44367-201ENSMUST00000196836 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44350-201ENSMUST00000197197 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44390-201ENSMUST00000197533 144 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44313-201ENSMUST00000198018 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44486-201ENSMUST00000198508 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44314-201ENSMUST00000199263 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44394-201ENSMUST00000199558 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44484-201ENSMUST00000199873 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44466-201ENSMUST00000200264 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Gm44359-201ENSMUST00000200671 138 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.06■□□□□ 0
Msh4Q99MT2 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.06■□□□□ 0
Msh4Q99MT2 Vti1a-206ENSMUST00000225529 1244 ntBASIC15.06■□□□□ 0
Msh4Q99MT2 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.06■□□□□ 0
Msh4Q99MT2 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Msh4Q99MT2 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Msh4Q99MT2 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Msh4Q99MT2 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Msh4Q99MT2 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.05■□□□□ 0
Msh4Q99MT2 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC15.05■□□□□ 0
Msh4Q99MT2 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.05■□□□□ -0
Msh4Q99MT2 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC15.05■□□□□ -0
Msh4Q99MT2 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC15.05■□□□□ -0
Msh4Q99MT2 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
Msh4Q99MT2 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Msh4Q99MT2 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Msh4Q99MT2 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Msh4Q99MT2 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Msh4Q99MT2 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Msh4Q99MT2 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 58.8 ms