Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gm14722-201ENSMUST00000118943 689 ntBASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gm15794-201ENSMUST00000120182 631 ntBASIC16.01■□□□□ 0.15
Trim60Q8VI40 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Gm29518-201ENSMUST00000190858 372 ntBASIC16.01■□□□□ 0.15
Trim60Q8VI40 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.01■□□□□ 0.15
Trim60Q8VI40 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trim60Q8VI40 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Gm13337-201ENSMUST00000119183 1594 ntBASIC16■□□□□ 0.15
Trim60Q8VI40 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16■□□□□ 0.15
Trim60Q8VI40 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 AC127349.1-201ENSMUST00000224590 266 ntBASIC16■□□□□ 0.15
Trim60Q8VI40 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16■□□□□ 0.15
Trim60Q8VI40 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Trim60Q8VI40 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
Trim60Q8VI40 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trim60Q8VI40 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.98■□□□□ 0.15
Trim60Q8VI40 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Trim60Q8VI40 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.97■□□□□ 0.15
Trim60Q8VI40 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms