Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
ShhQ62226 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
ShhQ62226 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.4□□□□□ -0.1
ShhQ62226 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC14.4□□□□□ -0.1
ShhQ62226 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC14.4□□□□□ -0.1
ShhQ62226 Gm11025-201ENSMUST00000140773 466 ntBASIC14.4□□□□□ -0.1
ShhQ62226 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.4□□□□□ -0.1
ShhQ62226 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.4□□□□□ -0.1
ShhQ62226 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC14.4□□□□□ -0.1
ShhQ62226 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Gm44729-201ENSMUST00000206759 2052 ntBASIC14.4□□□□□ -0.1
ShhQ62226 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
ShhQ62226 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC14.39□□□□□ -0.11
ShhQ62226 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Mir3113-201ENSMUST00000175478 76 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.39□□□□□ -0.11
ShhQ62226 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ShhQ62226 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC14.39□□□□□ -0.11
ShhQ62226 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ShhQ62226 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
ShhQ62226 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.39□□□□□ -0.11
ShhQ62226 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
ShhQ62226 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
ShhQ62226 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ShhQ62226 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Gm14701-201ENSMUST00000117156 348 ntBASIC14.38□□□□□ -0.11
ShhQ62226 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC14.38□□□□□ -0.11
ShhQ62226 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.38□□□□□ -0.11
ShhQ62226 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.38□□□□□ -0.11
ShhQ62226 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
ShhQ62226 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC14.38□□□□□ -0.11
ShhQ62226 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
ShhQ62226 AC133083.1-201ENSMUST00000221736 2209 ntBASIC14.38□□□□□ -0.11
ShhQ62226 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
ShhQ62226 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms