Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.01■□□□□ 0.31
Hmgb1P63158 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Hmgb1P63158 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC17.01■□□□□ 0.31
Hmgb1P63158 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Hmgb1P63158 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Hmgb1P63158 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC17■□□□□ 0.31
Hmgb1P63158 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17■□□□□ 0.31
Hmgb1P63158 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17■□□□□ 0.31
Hmgb1P63158 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Hmgb1P63158 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Hmgb1P63158 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17■□□□□ 0.31
Hmgb1P63158 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Hmgb1P63158 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Gm25745-201ENSMUST00000174945 133 ntBASIC16.99■□□□□ 0.31
Hmgb1P63158 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
Hmgb1P63158 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
Hmgb1P63158 AC108846.1-201ENSMUST00000214531 513 ntBASIC16.99■□□□□ 0.31
Hmgb1P63158 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Hmgb1P63158 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Hmgb1P63158 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Gm10584-201ENSMUST00000207036 2628 ntBASIC16.99■□□□□ 0.31
Hmgb1P63158 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Hmgb1P63158 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Hmgb1P63158 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
Hmgb1P63158 Gm15372-201ENSMUST00000120729 834 ntBASIC16.98■□□□□ 0.31
Hmgb1P63158 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
Hmgb1P63158 AC117588.1-201ENSMUST00000228510 999 ntBASIC16.98■□□□□ 0.31
Hmgb1P63158 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
Hmgb1P63158 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Hmgb1P63158 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC16.97■□□□□ 0.31
Hmgb1P63158 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Hmgb1P63158 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Hmgb1P63158 Gm12497-201ENSMUST00000138778 237 ntBASIC16.97■□□□□ 0.31
Hmgb1P63158 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms