Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cdh11P55288 Tfap2a-203ENSMUST00000223869 2037 ntBASIC14.12□□□□□ -0.15
Cdh11P55288 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cdh11P55288 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 BC037039-201ENSMUST00000192003 2205 ntBASIC14.11□□□□□ -0.15
Cdh11P55288 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.11□□□□□ -0.15
Cdh11P55288 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC14.11□□□□□ -0.15
Cdh11P55288 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 AC124569.2-201ENSMUST00000225998 818 ntBASIC14.11□□□□□ -0.15
Cdh11P55288 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC14.11□□□□□ -0.15
Cdh11P55288 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Smpd1-201ENSMUST00000046983 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cdh11P55288 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.1□□□□□ -0.15
Cdh11P55288 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC14.1□□□□□ -0.15
Cdh11P55288 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdh11P55288 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdh11P55288 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Eps8l1-201ENSMUST00000086372 2522 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Cdh11P55288 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.1□□□□□ -0.15
Cdh11P55288 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Cdh11P55288 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
Cdh11P55288 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cdh11P55288 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.09□□□□□ -0.15
Cdh11P55288 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC14.09□□□□□ -0.15
Cdh11P55288 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Cdh11P55288 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC14.09□□□□□ -0.15
Cdh11P55288 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cdh11P55288 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.09□□□□□ -0.15
Cdh11P55288 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Cdh11P55288 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cdh11P55288 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Cdh11P55288 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Cdh11P55288 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Cdh11P55288 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cdh11P55288 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Cdh11P55288 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Cdh11P55288 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.08□□□□□ -0.15
Cdh11P55288 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC14.08□□□□□ -0.15
Cdh11P55288 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms