Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Smarce1O54941 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Gm13034-201ENSMUST00000121342 3177 ntBASIC18.4■□□□□ 0.54
Smarce1O54941 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 AC127349.1-201ENSMUST00000224590 266 ntBASIC18.4■□□□□ 0.54
Smarce1O54941 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Smarce1O54941 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Smarce1O54941 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Smarce1O54941 Gm29340-201ENSMUST00000188763 3854 ntBASIC18.39■□□□□ 0.53
Smarce1O54941 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.39■□□□□ 0.53
Smarce1O54941 Gm14722-201ENSMUST00000118943 689 ntBASIC18.39■□□□□ 0.53
Smarce1O54941 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.39■□□□□ 0.53
Smarce1O54941 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Smarce1O54941 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Smarce1O54941 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC18.39■□□□□ 0.53
Smarce1O54941 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC18.39■□□□□ 0.53
Smarce1O54941 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Smarce1O54941 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC18.39■□□□□ 0.53
Smarce1O54941 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Smarce1O54941 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Smarce1O54941 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Smarce1O54941 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Gm44454-201ENSMUST00000198541 138 ntBASIC18.38■□□□□ 0.53
Smarce1O54941 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.38■□□□□ 0.53
Smarce1O54941 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Smarce1O54941 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC18.38■□□□□ 0.53
Smarce1O54941 Gm45605-201ENSMUST00000210265 4269 ntBASIC18.37■□□□□ 0.53
Smarce1O54941 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Smarce1O54941 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC18.37■□□□□ 0.53
Smarce1O54941 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Smarce1O54941 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Smarce1O54941 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Smarce1O54941 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Smarce1O54941 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Smarce1O54941 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Smarce1O54941 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.36■□□□□ 0.53
Smarce1O54941 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC18.36■□□□□ 0.53
Smarce1O54941 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Gm23634-201ENSMUST00000175071 91 ntBASIC18.36■□□□□ 0.53
Smarce1O54941 Mir3081-201ENSMUST00000175305 84 ntBASIC18.36■□□□□ 0.53
Smarce1O54941 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC18.36■□□□□ 0.53
Smarce1O54941 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.36■□□□□ 0.53
Smarce1O54941 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Smarce1O54941 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms