Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC15.1■□□□□ 0.01
Chd3B1AR17 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC15.1■□□□□ 0.01
Chd3B1AR17 AC151286.1-201ENSMUST00000198489 145 ntBASIC15.1■□□□□ 0.01
Chd3B1AR17 Gm5312-201ENSMUST00000203728 547 ntBASIC15.1■□□□□ 0.01
Chd3B1AR17 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Chd3B1AR17 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC15.1■□□□□ 0.01
Chd3B1AR17 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.1■□□□□ 0.01
Chd3B1AR17 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC15.1■□□□□ 0.01
Chd3B1AR17 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Chd3B1AR17 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Chd3B1AR17 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Gm15427-201ENSMUST00000117288 531 ntBASIC15.09■□□□□ 0.01
Chd3B1AR17 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC15.09■□□□□ 0.01
Chd3B1AR17 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Chd3B1AR17 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Chd3B1AR17 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd3B1AR17 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd3B1AR17 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd3B1AR17 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Chd3B1AR17 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Chd3B1AR17 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Chd3B1AR17 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC15.08■□□□□ 0
Chd3B1AR17 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC15.08■□□□□ 0
Chd3B1AR17 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.08■□□□□ 0
Chd3B1AR17 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC15.08■□□□□ 0
Chd3B1AR17 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC15.08■□□□□ 0
Chd3B1AR17 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Nrn1-204ENSMUST00000224323 1779 ntBASIC15.08■□□□□ 0
Chd3B1AR17 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC15.08■□□□□ 0
Chd3B1AR17 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Chd3B1AR17 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Chd3B1AR17 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC15.07■□□□□ 0
Chd3B1AR17 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.07■□□□□ 0
Chd3B1AR17 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Gm13337-201ENSMUST00000119183 1594 ntBASIC15.07■□□□□ 0
Chd3B1AR17 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Chd3B1AR17 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC15.07■□□□□ 0
Chd3B1AR17 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.07■□□□□ 0
Chd3B1AR17 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.07■□□□□ 0
Chd3B1AR17 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.07■□□□□ 0
Chd3B1AR17 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC15.07■□□□□ 0
Chd3B1AR17 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 9.4 ms