Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Trim3Q9R1R2 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Trim3Q9R1R2 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim3Q9R1R2 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Gm38327-201ENSMUST00000195852 1755 ntBASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim3Q9R1R2 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim3Q9R1R2 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim3Q9R1R2 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms