Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm8825-201ENSMUST00000182565 998 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm4518-201ENSMUST00000182638 718 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm43347-201ENSMUST00000200226 580 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Prpf40aQ9R1C7 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gm45212-201ENSMUST00000205831 3403 ntBASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Hook2-201ENSMUST00000064495 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gm27459-201ENSMUST00000184860 107 ntBASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gm7506-201ENSMUST00000207758 815 ntBASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Prpf40aQ9R1C7 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Gm5837-201ENSMUST00000191844 1369 ntBASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Gm24589-201ENSMUST00000116692 94 ntBASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Gm4459-201ENSMUST00000118750 468 ntBASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Gm8655-201ENSMUST00000221159 852 ntBASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Prpf40aQ9R1C7 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Prpf40aQ9R1C7 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.01■□□□□ 0.31
Prpf40aQ9R1C7 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms