Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Gm13337-201ENSMUST00000119183 1594 ntBASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Scn4aQ9ER60 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm18056-201ENSMUST00000207670 568 ntBASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm18061-201ENSMUST00000208350 562 ntBASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm18063-201ENSMUST00000208529 568 ntBASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm18052-201ENSMUST00000208750 559 ntBASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Scn4aQ9ER60 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Mir8109-201ENSMUST00000184375 117 ntBASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Scn4aQ9ER60 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Mir7654-201ENSMUST00000185082 70 ntBASIC20.9■□□□□ 0.94
Scn4aQ9ER60 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC20.9■□□□□ 0.94
Scn4aQ9ER60 AC165157.4-201ENSMUST00000220587 139 ntBASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Scn4aQ9ER60 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn4aQ9ER60 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn4aQ9ER60 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn4aQ9ER60 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Scn4aQ9ER60 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Scn4aQ9ER60 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Scn4aQ9ER60 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms