Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Gm11839-201ENSMUST00000120647 1953 ntBASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Gm8344-201ENSMUST00000119813 856 ntBASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Gm27646-201ENSMUST00000183989 110 ntBASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Birc2-201ENSMUST00000054878 378 ntBASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Gm43352-201ENSMUST00000196419 3065 ntBASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp49Q6P9L4 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Gm13830-205ENSMUST00000201195 1155 ntBASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC17.34■□□□□ 0.37
Usp49Q6P9L4 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Gm10584-201ENSMUST00000207036 2628 ntBASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Usp49Q6P9L4 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp49Q6P9L4 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.33■□□□□ 0.36
Usp49Q6P9L4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC17.33■□□□□ 0.36
Usp49Q6P9L4 AC158538.2-201ENSMUST00000225455 906 ntBASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp49Q6P9L4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Gm15358-201ENSMUST00000119249 520 ntBASIC17.32■□□□□ 0.36
Usp49Q6P9L4 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Gm7286-201ENSMUST00000182691 1007 ntBASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Gm27459-201ENSMUST00000184860 107 ntBASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp49Q6P9L4 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms