Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.24■□□□□ 0.19
Hmgb4Q6P8W9 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb4Q6P8W9 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Hmgb4Q6P8W9 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm14822-201ENSMUST00000122247 291 ntBASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Hmgb4Q6P8W9 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 AC225888.1-201ENSMUST00000227184 728 ntBASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb4Q6P8W9 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb4Q6P8W9 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb4Q6P8W9 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb4Q6P8W9 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb4Q6P8W9 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Hmgb4Q6P8W9 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Gm27397-201ENSMUST00000184997 107 ntBASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb4Q6P8W9 Gm8784-201ENSMUST00000222096 1435 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms