Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.65□□□□□ -0.38
Col7a1Q63870 Dupd1-202ENSMUST00000224735 548 ntBASIC12.65□□□□□ -0.38
Col7a1Q63870 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col7a1Q63870 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC12.65□□□□□ -0.38
Col7a1Q63870 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col7a1Q63870 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.65□□□□□ -0.38
Col7a1Q63870 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
Col7a1Q63870 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Col7a1Q63870 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col7a1Q63870 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Col7a1Q63870 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
Col7a1Q63870 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
Col7a1Q63870 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.65□□□□□ -0.39
Col7a1Q63870 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Col7a1Q63870 Gm29127-201ENSMUST00000188304 517 ntBASIC12.65□□□□□ -0.39
Col7a1Q63870 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.39
Col7a1Q63870 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC12.65□□□□□ -0.39
Col7a1Q63870 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC12.64□□□□□ -0.39
Col7a1Q63870 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Gm24526-201ENSMUST00000082921 158 ntBASIC12.64□□□□□ -0.39
Col7a1Q63870 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Col7a1Q63870 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.64□□□□□ -0.39
Col7a1Q63870 Gm16476-201ENSMUST00000221544 139 ntBASIC12.64□□□□□ -0.39
Col7a1Q63870 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC12.64□□□□□ -0.39
Col7a1Q63870 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.64□□□□□ -0.39
Col7a1Q63870 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.63□□□□□ -0.39
Col7a1Q63870 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.63□□□□□ -0.39
Col7a1Q63870 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col7a1Q63870 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
Col7a1Q63870 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.63□□□□□ -0.39
Col7a1Q63870 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Col7a1Q63870 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col7a1Q63870 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm27572-201ENSMUST00000183702 255 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm37259-201ENSMUST00000193903 849 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 AA619741-201ENSMUST00000195095 646 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.62□□□□□ -0.39
Col7a1Q63870 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC12.62□□□□□ -0.39
Col7a1Q63870 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC12.62□□□□□ -0.39
Col7a1Q63870 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.62□□□□□ -0.39
Col7a1Q63870 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC12.62□□□□□ -0.39
Col7a1Q63870 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC12.62□□□□□ -0.39
Col7a1Q63870 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm19220-201ENSMUST00000222682 803 ntBASIC12.62□□□□□ -0.39
Col7a1Q63870 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
Col7a1Q63870 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col7a1Q63870 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col7a1Q63870 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col7a1Q63870 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col7a1Q63870 Gm4857-201ENSMUST00000192718 785 ntBASIC12.61□□□□□ -0.39
Col7a1Q63870 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC12.61□□□□□ -0.39
Col7a1Q63870 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col7a1Q63870 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Col7a1Q63870 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms