Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Ccdc88aQ5SNZ0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Ccdc88aQ5SNZ0 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm5184-201ENSMUST00000220417 1702 ntBASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm2423-201ENSMUST00000074863 733 ntBASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm15998-201ENSMUST00000135144 1844 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.66■□□□□ 0.42
Ccdc88aQ5SNZ0 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Ccdc88aQ5SNZ0 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.64■□□□□ 0.42
Ccdc88aQ5SNZ0 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 AC126250.1-201ENSMUST00000228343 1768 ntBASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC17.64■□□□□ 0.41
Ccdc88aQ5SNZ0 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc88aQ5SNZ0 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Ccdc88aQ5SNZ0 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
Ccdc88aQ5SNZ0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc88aQ5SNZ0 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC17.63■□□□□ 0.41
Ccdc88aQ5SNZ0 Gm7336-201ENSMUST00000107041 1232 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms