Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim40Q3UWA4 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim40Q3UWA4 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Grwd1-202ENSMUST00000131384 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Gm11336-201ENSMUST00000118168 334 ntBASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Gm5417-201ENSMUST00000079706 384 ntBASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim40Q3UWA4 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Gm16061-201ENSMUST00000122167 857 ntBASIC14.55□□□□□ -0.08
Trim40Q3UWA4 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Gm8784-201ENSMUST00000222096 1435 ntBASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim40Q3UWA4 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Gm12134-201ENSMUST00000122109 520 ntBASIC14.54□□□□□ -0.08
Trim40Q3UWA4 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Gm30025-201ENSMUST00000218555 728 ntBASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Gm7370-201ENSMUST00000219471 767 ntBASIC14.54□□□□□ -0.08
Trim40Q3UWA4 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms