Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
Chd3B1AR17 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC15.14■□□□□ 0.01
Chd3B1AR17 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm44335-201ENSMUST00000196879 141 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm44297-201ENSMUST00000198304 141 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm44346-201ENSMUST00000198851 141 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 Chchd1-203ENSMUST00000224633 557 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 Gm15500-202ENSMUST00000071641 1019 ntBASIC15.14■□□□□ 0.01
Chd3B1AR17 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd3B1AR17 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Chd3B1AR17 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Chd3B1AR17 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Chd3B1AR17 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC15.13■□□□□ 0.01
Chd3B1AR17 AC131709.1-201ENSMUST00000224731 1180 ntBASIC15.13■□□□□ 0.01
Chd3B1AR17 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Chd3B1AR17 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Chd3B1AR17 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Chd3B1AR17 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.13■□□□□ 0.01
Chd3B1AR17 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Chd3B1AR17 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Gm4913-201ENSMUST00000117075 1290 ntBASIC15.13■□□□□ 0.01
Chd3B1AR17 Gm11453-201ENSMUST00000117318 1007 ntBASIC15.13■□□□□ 0.01
Chd3B1AR17 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Gm27494-201ENSMUST00000184735 189 ntBASIC15.13■□□□□ 0.01
Chd3B1AR17 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Chd3B1AR17 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Chd3B1AR17 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Chd3B1AR17 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Chd3B1AR17 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd3B1AR17 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.11■□□□□ 0.01
Chd3B1AR17 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Gm43125-201ENSMUST00000201724 730 ntBASIC15.11■□□□□ 0.01
Chd3B1AR17 CT943659.1-201ENSMUST00000215459 326 ntBASIC15.11■□□□□ 0.01
Chd3B1AR17 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.11■□□□□ 0.01
Chd3B1AR17 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 AC069562.2-201ENSMUST00000224644 2146 ntBASIC15.11■□□□□ 0.01
Chd3B1AR17 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC15.11■□□□□ 0.01
Chd3B1AR17 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Chd3B1AR17 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms