Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC20.99■□□□□ 0.95
Scn4aQ9ER60 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Gm45293-201ENSMUST00000209754 1812 ntBASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.98■□□□□ 0.95
Scn4aQ9ER60 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Gm12176-201ENSMUST00000121420 875 ntBASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Mir692-1-201ENSMUST00000102263 109 ntBASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Scn4aQ9ER60 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Gm15236-201ENSMUST00000117309 379 ntBASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Gm27243-201ENSMUST00000183964 521 ntBASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Gm7558-201ENSMUST00000193221 1165 ntBASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Scn4aQ9ER60 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Scn4aQ9ER60 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC20.95■□□□□ 0.95
Scn4aQ9ER60 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Gm6244-201ENSMUST00000178732 841 ntBASIC20.95■□□□□ 0.94
Scn4aQ9ER60 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 AC122459.1-201ENSMUST00000228373 885 ntBASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Scn4aQ9ER60 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Gm27631-201ENSMUST00000184163 466 ntBASIC20.94■□□□□ 0.94
Scn4aQ9ER60 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 AC150560.1-201ENSMUST00000227731 1187 ntBASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Scn4aQ9ER60 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 54.5 ms