Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ddx56Q9D0R4 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Birc2-201ENSMUST00000054878 378 ntBASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Ablim2-202ENSMUST00000101280 3042 ntTSL 5 BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx56Q9D0R4 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gm34391-201ENSMUST00000203706 907 ntBASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 AC159093.1-201ENSMUST00000227779 380 ntBASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ddx56Q9D0R4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gm15358-201ENSMUST00000119249 520 ntBASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx56Q9D0R4 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms