Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC16.24■□□□□ 0.19
Ccdc40Q8BI79 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Gm33142-201ENSMUST00000193913 867 ntBASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Ccdc40Q8BI79 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Gm1818-201ENSMUST00000169406 1184 ntBASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Gm27704-201ENSMUST00000185094 107 ntBASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ccdc40Q8BI79 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Gm42473-201ENSMUST00000201056 2291 ntBASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Bri3bp-201ENSMUST00000049040 6473 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ccdc40Q8BI79 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ccdc40Q8BI79 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms