Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Usp28Q5I043 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Usp28Q5I043 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.64■□□□□ 0.41
Usp28Q5I043 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Gm13836-201ENSMUST00000121159 501 ntBASIC17.64■□□□□ 0.41
Usp28Q5I043 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Gm27867-201ENSMUST00000184778 125 ntBASIC17.64■□□□□ 0.41
Usp28Q5I043 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
Usp28Q5I043 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Usp28Q5I043 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
Usp28Q5I043 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.63■□□□□ 0.41
Usp28Q5I043 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC17.63■□□□□ 0.41
Usp28Q5I043 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp28Q5I043 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp28Q5I043 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp28Q5I043 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 AC160980.1-201ENSMUST00000224136 970 ntBASIC17.63■□□□□ 0.41
Usp28Q5I043 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Usp28Q5I043 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
Usp28Q5I043 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Usp28Q5I043 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Usp28Q5I043 Efs-202ENSMUST00000227037 2540 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp28Q5I043 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Gm15165-201ENSMUST00000118140 502 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp28Q5I043 Gm25745-201ENSMUST00000174945 133 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
Usp28Q5I043 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Otx2os1-206ENSMUST00000228153 787 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Sybu-209ENSMUST00000228639 4113 ntBASIC17.62■□□□□ 0.41
Usp28Q5I043 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Usp28Q5I043 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC17.62■□□□□ 0.41
Usp28Q5I043 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Usp28Q5I043 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
Usp28Q5I043 Gm5049-201ENSMUST00000195878 1590 ntBASIC17.61■□□□□ 0.41
Usp28Q5I043 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.61■□□□□ 0.41
Usp28Q5I043 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Usp28Q5I043 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms