Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Upf3aQ3ULJ3 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Fgf17-202ENSMUST00000227123 1336 ntBASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Gm25948-201ENSMUST00000175334 112 ntBASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 AC025913.2-201ENSMUST00000220136 1766 ntBASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.27■□□□□ 0.2
Upf3aQ3ULJ3 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.27■□□□□ 0.19
Upf3aQ3ULJ3 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3aQ3ULJ3 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3aQ3ULJ3 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Upf3aQ3ULJ3 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC16.27■□□□□ 0.19
Upf3aQ3ULJ3 Nudt18-203ENSMUST00000228768 1578 ntBASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Upf3aQ3ULJ3 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm44729-201ENSMUST00000206759 2052 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm10499-201ENSMUST00000174094 934 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm18057-201ENSMUST00000208220 503 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Upf3aQ3ULJ3 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Upf3aQ3ULJ3 CT025626.1-201ENSMUST00000223735 1455 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 111.1 ms