Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Chmp6P0C0A3 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Prob1-201ENSMUST00000097619 3021 ntBASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Gm4459-201ENSMUST00000118750 468 ntBASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Chmp6P0C0A3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Chmp6P0C0A3 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Mir8098-201ENSMUST00000184011 137 ntBASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Gm28659-201ENSMUST00000188013 759 ntBASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Chmp6P0C0A3 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm4609-201ENSMUST00000106443 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm5138-201ENSMUST00000113842 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm15191-201ENSMUST00000117933 1000 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm12182-201ENSMUST00000118655 1008 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm13882-201ENSMUST00000120886 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm12497-201ENSMUST00000138778 237 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm10284-201ENSMUST00000145057 1005 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm10481-201ENSMUST00000179228 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm2574-201ENSMUST00000181051 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm3200-201ENSMUST00000181493 1002 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm8825-201ENSMUST00000182565 998 ntBASIC16.88■□□□□ 0.29
Chmp6P0C0A3 Gm4518-201ENSMUST00000182638 718 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms