Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 CT009764.1-201ENSMUST00000222260 483 ntBASIC12.08□□□□□ -0.48
Hoxd3P09027 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC12.08□□□□□ -0.48
Hoxd3P09027 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Hoxd3P09027 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hoxd3P09027 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Gm27525-201ENSMUST00000184465 107 ntBASIC12.07□□□□□ -0.48
Hoxd3P09027 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 AC093926.2-201ENSMUST00000214468 1228 ntBASIC12.07□□□□□ -0.48
Hoxd3P09027 AC153961.1-201ENSMUST00000217760 385 ntBASIC12.07□□□□□ -0.48
Hoxd3P09027 Psmb5-202ENSMUST00000227257 622 ntBASIC12.07□□□□□ -0.48
Hoxd3P09027 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Hoxd3P09027 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Hoxd3P09027 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm15358-201ENSMUST00000119249 520 ntBASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm5712-201ENSMUST00000199748 1043 ntBASIC12.06□□□□□ -0.48
Hoxd3P09027 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 AC154222.1-201ENSMUST00000223882 475 ntBASIC12.06□□□□□ -0.48
Hoxd3P09027 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC12.06□□□□□ -0.48
Hoxd3P09027 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Hoxd3P09027 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms