Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Chd3B1AR17 Cd2bp2-201ENSMUST00000035771 1309 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC15.18■□□□□ 0.02
Chd3B1AR17 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Chd3B1AR17 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.18■□□□□ 0.02
Chd3B1AR17 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Gm44492-201ENSMUST00000197012 141 ntBASIC15.18■□□□□ 0.02
Chd3B1AR17 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Chd3B1AR17 Tnip2-203ENSMUST00000114359 1642 ntTSL 5 BASIC15.18■□□□□ 0.02
Chd3B1AR17 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Prob1-201ENSMUST00000097619 3021 ntBASIC15.18■□□□□ 0.02
Chd3B1AR17 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Chd3B1AR17 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Gm24513-201ENSMUST00000174964 138 ntBASIC15.17■□□□□ 0.02
Chd3B1AR17 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.17■□□□□ 0.02
Chd3B1AR17 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Chd3B1AR17 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd3B1AR17 Gm23935-201ENSMUST00000102303 57 ntBASIC15.16■□□□□ 0.02
Chd3B1AR17 Gm24270-201ENSMUST00000102326 57 ntBASIC15.16■□□□□ 0.02
Chd3B1AR17 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Gm24245-201ENSMUST00000157318 57 ntBASIC15.16■□□□□ 0.02
Chd3B1AR17 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 AC124549.3-201ENSMUST00000225541 367 ntBASIC15.16■□□□□ 0.02
Chd3B1AR17 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Chd3B1AR17 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd3B1AR17 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Chd3B1AR17 AC157650.3-201ENSMUST00000225058 1476 ntBASIC15.15■□□□□ 0.02
Chd3B1AR17 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Gm5253-201ENSMUST00000187104 1025 ntBASIC15.15■□□□□ 0.02
Chd3B1AR17 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Chd3B1AR17 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd3B1AR17 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms