Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Sybu-209ENSMUST00000228639 4113 ntBASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Prpf40aQ9R1C7 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Gm12644-201ENSMUST00000119935 606 ntBASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Gm25745-201ENSMUST00000174945 133 ntBASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Prpf40aQ9R1C7 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Gm6257-201ENSMUST00000163864 910 ntBASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Mvd-201ENSMUST00000006692 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Prpf40aQ9R1C7 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.11■□□□□ 0.33
Prpf40aQ9R1C7 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Tmem248-202ENSMUST00000111298 3570 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Arfgap2-202ENSMUST00000080008 3068 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC17.1■□□□□ 0.33
Prpf40aQ9R1C7 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Prpf40aQ9R1C7 Gm12497-201ENSMUST00000138778 237 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms