Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Rbfox2-206ENSMUST00000227314 1810 ntBASIC15.18■□□□□ 0.02
Msh4Q99MT2 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Msh4Q99MT2 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC15.17■□□□□ 0.02
Msh4Q99MT2 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.17■□□□□ 0.02
Msh4Q99MT2 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC15.17■□□□□ 0.02
Msh4Q99MT2 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Msh4Q99MT2 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
Msh4Q99MT2 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Gm1818-201ENSMUST00000169406 1184 ntBASIC15.16■□□□□ 0.02
Msh4Q99MT2 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Msh4Q99MT2 AC127349.1-201ENSMUST00000224590 266 ntBASIC15.16■□□□□ 0.02
Msh4Q99MT2 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Msh4Q99MT2 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.15■□□□□ 0.02
Msh4Q99MT2 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Gm6858-201ENSMUST00000208582 1468 ntBASIC15.15■□□□□ 0.02
Msh4Q99MT2 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Thop1-201ENSMUST00000005057 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.15■□□□□ 0.02
Msh4Q99MT2 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Msh4Q99MT2 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 AC132265.1-201ENSMUST00000219233 1665 ntBASIC15.14■□□□□ 0.01
Msh4Q99MT2 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Mir8098-201ENSMUST00000184011 137 ntBASIC15.14■□□□□ 0.01
Msh4Q99MT2 Gm28659-201ENSMUST00000188013 759 ntBASIC15.14■□□□□ 0.01
Msh4Q99MT2 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC15.14■□□□□ 0.01
Msh4Q99MT2 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms