Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Brf1Q8CFK2 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Gm13884-201ENSMUST00000118103 829 ntBASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Mir8098-201ENSMUST00000184011 137 ntBASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Gm27528-202ENSMUST00000222916 2012 ntBASIC18.78■□□□□ 0.6
Brf1Q8CFK2 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Gm15358-201ENSMUST00000119249 520 ntBASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 AC158538.2-201ENSMUST00000225455 906 ntBASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Brf1Q8CFK2 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Brf1Q8CFK2 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Brf1Q8CFK2 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
Brf1Q8CFK2 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Brf1Q8CFK2 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Gm6089-201ENSMUST00000197666 938 ntBASIC18.76■□□□□ 0.59
Brf1Q8CFK2 AC122024.2-201ENSMUST00000220086 871 ntBASIC18.76■□□□□ 0.59
Brf1Q8CFK2 AC159093.1-201ENSMUST00000227779 380 ntBASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Brf1Q8CFK2 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Gm7862-201ENSMUST00000121461 292 ntBASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Brf1Q8CFK2 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms