Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Six3Q62233 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Six3Q62233 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Six3Q62233 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Six3Q62233 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Six3Q62233 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.23■□□□□ 0.03
Six3Q62233 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Six3Q62233 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC15.23■□□□□ 0.03
Six3Q62233 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Six3Q62233 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.23■□□□□ 0.03
Six3Q62233 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Gm7367-201ENSMUST00000057611 492 ntBASIC15.23■□□□□ 0.03
Six3Q62233 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six3Q62233 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
Six3Q62233 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Six3Q62233 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Six3Q62233 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Six3Q62233 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.22■□□□□ 0.03
Six3Q62233 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.22■□□□□ 0.03
Six3Q62233 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Six3Q62233 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Six3Q62233 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC15.21■□□□□ 0.03
Six3Q62233 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
Six3Q62233 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC15.21■□□□□ 0.03
Six3Q62233 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 AC154471.1-201ENSMUST00000224418 436 ntBASIC15.21■□□□□ 0.03
Six3Q62233 AC127349.1-201ENSMUST00000224590 266 ntBASIC15.21■□□□□ 0.03
Six3Q62233 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Six3Q62233 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Six3Q62233 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six3Q62233 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six3Q62233 Prkcz2-201ENSMUST00000206136 1756 ntBASIC15.21■□□□□ 0.02
Six3Q62233 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six3Q62233 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six3Q62233 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Six3Q62233 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six3Q62233 Grk6-207ENSMUST00000225925 2769 ntBASIC15.2■□□□□ 0.02
Six3Q62233 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six3Q62233 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six3Q62233 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC15.2■□□□□ 0.02
Six3Q62233 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Six3Q62233 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms