Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Trim58Q5NCC9 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 AC154412.1-201ENSMUST00000226540 2786 ntBASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Gm8097-201ENSMUST00000117903 829 ntBASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Trim58Q5NCC9 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Trim58Q5NCC9 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Gm7286-201ENSMUST00000182691 1007 ntBASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 AC160338.1-201ENSMUST00000214232 705 ntBASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Grk6-207ENSMUST00000225925 2769 ntBASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Trim58Q5NCC9 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim58Q5NCC9 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
Trim58Q5NCC9 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Trim58Q5NCC9 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Trim58Q5NCC9 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 86.3 ms